Free SKILL.md scraped from GitHub. Clone the repo or copy the file directly into your Claude Code skills directory.
npx versuz@latest install a5c-ai-babysitter-library-specializations-domains-science-bioinformatics-skills-gsgit clone https://github.com/a5c-ai/babysitter.gitcp babysitter/SKILL.MD ~/.claude/skills/a5c-ai-babysitter-library-specializations-domains-science-bioinformatics-skills-gs/SKILL.md---
name: gsea-pathway-analyzer
description: Gene Set Enrichment Analysis skill for functional annotation and pathway interpretation
allowed-tools:
- Read
- Write
- Glob
- Grep
- Edit
- WebFetch
- WebSearch
- Bash
metadata:
version: "1.0"
category: bioinformatics
tags:
- transcriptomics
- pathway-analysis
- gsea
- functional
---
# GSEA Pathway Analyzer Skill
## Purpose
Enable Gene Set Enrichment Analysis for functional annotation and pathway interpretation.
## Capabilities
- Preranked GSEA execution
- Gene ontology enrichment
- KEGG/Reactome pathway analysis
- Custom gene set support
- Leading edge analysis
- Publication-ready visualizations
## Usage Guidelines
- Rank genes appropriately for analysis type
- Select relevant gene set collections
- Apply multiple testing correction
- Identify leading edge genes for interpretation
- Generate clear visualizations
- Document gene set versions
## Dependencies
- GSEA
- clusterProfiler
- g:Profiler
- Enrichr
## Process Integration
- RNA-seq Differential Expression Analysis (rnaseq-differential-expression)
- Single-Cell RNA-seq Analysis (scrnaseq-analysis)
- Multi-Omics Data Integration (multi-omics-integration)