Free SKILL.md scraped from GitHub. Clone the repo or copy the file directly into your Claude Code skills directory.
npx versuz@latest install a5c-ai-babysitter-library-specializations-domains-science-bioinformatics-skills-krgit clone https://github.com/a5c-ai/babysitter.gitcp babysitter/SKILL.MD ~/.claude/skills/a5c-ai-babysitter-library-specializations-domains-science-bioinformatics-skills-kr/SKILL.md---
name: kraken2-taxonomic-classifier
description: Kraken2 taxonomic classification skill for rapid metagenomic read assignment
allowed-tools:
- Read
- Write
- Glob
- Grep
- Edit
- WebFetch
- WebSearch
- Bash
metadata:
version: "1.0"
category: bioinformatics
tags:
- metagenomics
- taxonomy
- classification
- kraken
---
# Kraken2 Taxonomic Classifier Skill
## Purpose
Provide Kraken2 taxonomic classification for rapid metagenomic read assignment.
## Capabilities
- k-mer based classification
- Custom database creation
- Confidence score filtering
- Bracken abundance estimation
- Multi-sample reporting
- Memory-efficient operation
## Usage Guidelines
- Build or download appropriate databases
- Set confidence thresholds for accuracy
- Use Bracken for abundance estimation
- Generate reports for visualization
- Consider memory requirements
- Document database versions
## Dependencies
- Kraken2
- Bracken
- Centrifuge
## Process Integration
- Shotgun Metagenomics Pipeline (shotgun-metagenomics)
- 16S rRNA Microbiome Analysis (16s-microbiome-analysis)